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I'm going to take it in small digestible chunks.
¶2 A look behind the curtain of John Bates’ facade - The John Bates Affair
http://whatsupwiththatwatts.blogspot.com/2017/03/2-behind-curtain-of-bates-facade.htmlIt is clearly not for scientific reasons, even Bates said the data is okay.
It is clearly not for administrative reasons, it was clear to every reader that the paper was about a dataset produced for the paper, not a climate data record.
That leaves personal and political reasons. The news articles on the "scandal" provide evidence for problems working with others and Bates being transferred to a position without personnel to supervise. Thus personal reasons would be the best guess. It very often is.